Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PCPG rs6791462 chr3:156081835 A/G 4.93E-11 178 25.67 24.97 10.3 KM Plot
PCPG rs67923642 chr8:135487402 G/A 4.15E-5 170 25.2 24.7 16.83 KM Plot
PCPG rs6793815 chr3:80452014 C/T 0.000273 174 25.47 25.87 25.17 KM Plot
PCPG rs6794037 chr3:194789163 C/T 0.000204 178 12.22 28.03 25.28 KM Plot
PCPG rs67940783 chr2:241527282 G/A 3.68E-5 177 25.97 20.2 10.3 KM Plot
PCPG rs67943377 chr12:21641984 C/A 3.36E-8 172 25.4 25.67 2.28 KM Plot
PCPG rs6797622 chr3:195734915 C/T 1.24E-5 177 24.52 31.47 13.38 KM Plot
PCPG rs6797628 chr3:195734933 C/T 1.19E-5 178 24.52 30.9 13.38 KM Plot
PCPG rs6800032 chr3:136622560 C/T 0.000447 174 24.1 28.3 23.83 KM Plot
PCPG rs68031725 chr14:74505692 C/A 0.000221 175 25.4 27.43 10.43 KM Plot
PCPG rs68078235 chr14:74513640 G/A 0.000221 175 25.4 27.43 10.43 KM Plot
PCPG rs68112555 chr14:74618207 TTAAAA/T 4.31E-7 177 25.4 27.78 7.4 KM Plot
PCPG rs68123811 chr14:74559588 C/T 2.57E-5 174 25.47 26.57 10.3 KM Plot
PCPG rs684773 chr3:135956305 A/C 8.79E-5 178 25.17 25.7 24.7 KM Plot
PCPG rs6870207 chr5:171529721 A/G 0.000131 175 25.77 24.23 17.12 KM Plot